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	<title> &#187; Bert O&#8217;Malley</title>
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	<copyright>Copyright © The Protein Wrangler 2011 </copyright>
	<managingEditor>chempilot@gmail.com (The Protein Wrangler)</managingEditor>
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	<category>Science</category>
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	<itunes:subtitle>Ever want to know what being a scientist is really like?</itunes:subtitle>
	<itunes:summary>Ever want to know what being a scientist is really like? MSM provides short interviews with scientists about their research and why they became scientists.</itunes:summary>
	<itunes:keywords>science, research, education, scientist</itunes:keywords>
	<itunes:category text="Science &#38; Medicine">
		<itunes:category text="Natural Sciences" />
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	<itunes:author>The Protein Wrangler</itunes:author>
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		<title>Meet a Scientist Monday #13: Atul Chopra</title>
		<link>http://www.theproteinwrangler.com/2011/05/09/meet-a-scientist-monday-13-atul-chopra/</link>
		<comments>http://www.theproteinwrangler.com/2011/05/09/meet-a-scientist-monday-13-atul-chopra/#comments</comments>
		<pubDate>Mon, 09 May 2011 05:52:17 +0000</pubDate>
		<dc:creator>CarlWC</dc:creator>
				<category><![CDATA[Baylor College of Medicine]]></category>
		<category><![CDATA[Bert O'Malley]]></category>
		<category><![CDATA[biochmistry]]></category>
		<category><![CDATA[cellular energy]]></category>
		<category><![CDATA[Meet a Scientist Monday]]></category>
		<category><![CDATA[nuclear receptor]]></category>
		<category><![CDATA[podcast]]></category>
		<category><![CDATA[research]]></category>
		<category><![CDATA[Texas Medical Center]]></category>

		<guid isPermaLink="false">http://www.theproteinwrangler.com/?p=106</guid>
		<description><![CDATA[Welcome back to another edition of Meet a Scientist Monday! Today&#8217;s guest is Dr. Atul Chopra with the Baylor College of Medicine. To begin Podcast, press the arrow below: Here&#8217;s a link to my summary of Dr. Chopra&#8217;s paper. I hope you enjoyed this podcast of MSM. Please let me know what you think of [...]]]></description>
				<content:encoded><![CDATA[<p>Welcome back to another edition of Meet a Scientist Monday!  Today&#8217;s guest is Dr. Atul Chopra with the <a style="color:maroon" href="http://www.bcm.edu/">Baylor College of Medicine</a>.<br />
<br />
<div id="attachment_107" class="wp-caption aligncenter" style="width: 282px"><a href="http://www.theproteinwrangler.com/wp-content/uploads/2011/05/chopra.jpg"><img src="http://www.theproteinwrangler.com/wp-content/uploads/2011/05/chopra-272x300.jpg" alt="" title="chopra" width="272" height="300" class="size-medium wp-image-107" /></a><p class="wp-caption-text">Dr. Atul Chopra</p></div><br />
</p>
<p>To begin Podcast, press the arrow below:<br />
<br />
</p>
<p>Here&#8217;s a link to my summary of Dr. Chopra&#8217;s <a style="color:maroon" href="http://www.theproteinwrangler.com/2011/01/29/mongo-hungry/">paper</a>.</p>
<p>I hope you enjoyed this podcast of MSM. Please let me know what you think of it, good, bad, or ugly by e-mailing me at: proteinwrangler@gmail.com</p>
<p>If you are a scientist/engineer, I would love to have you participate in MSM! Send me an e-mail at : proteinwrangler@gmail.com</p>
]]></content:encoded>
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		<itunes:subtitle>Welcome back to another edition of Meet a Scientist Monday!  Today&#8217;s guest is Dr. Atul Chopra with the Baylor College of Medicine.

Dr. Atul Chopra

To begin Podcast, press the arrow below:


Here&#8217;s a link to my summary of Dr. Chopra[...]</itunes:subtitle>
		<itunes:summary>Welcome back to another edition of Meet a Scientist Monday!  Today&#8217;s guest is Dr. Atul Chopra with the Baylor College of Medicine.

Dr. Atul Chopra

To begin Podcast, press the arrow below:


Here&#8217;s a link to my summary of Dr. Chopra&#8217;s paper.
I hope you enjoyed this podcast of MSM. Please let me know what you think of it, good, bad, or ugly by e-mailing me at: proteinwrangler@gmail.com
If you are a scientist/engineer, I would love to have you participate in MSM! Send me an e-mail at : proteinwrangler@gmail.com</itunes:summary>
		<itunes:keywords>biochmistry, podcast, research</itunes:keywords>
		<itunes:author>The Protein Wrangler</itunes:author>
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		<itunes:block>no</itunes:block>
	</item>
		<item>
		<title>Mongo Hungry!</title>
		<link>http://www.theproteinwrangler.com/2011/01/29/mongo-hungry/</link>
		<comments>http://www.theproteinwrangler.com/2011/01/29/mongo-hungry/#comments</comments>
		<pubDate>Sat, 29 Jan 2011 16:51:00 +0000</pubDate>
		<dc:creator>CarlWC</dc:creator>
				<category><![CDATA[Baylor College of Medicine]]></category>
		<category><![CDATA[Bert O'Malley]]></category>
		<category><![CDATA[cellular energy]]></category>
		<category><![CDATA[co-activator]]></category>
		<category><![CDATA[fat]]></category>
		<category><![CDATA[metabolism]]></category>
		<category><![CDATA[nuclear receptor]]></category>

		<guid isPermaLink="false">http://www.theproteinwrangler.com/?p=23</guid>
		<description><![CDATA[Your car engine mixes fuel from its tank and oxygen from the air causing a chemical reaction that releases energy and spins your car&#8217;s tires. A quick look at the car&#8217;s gas gauge tells you how much fuel it has left and therefore how much longer its tires will spin. Your body also creates a [...]]]></description>
				<content:encoded><![CDATA[<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-size: small;">Your car engine mixes fuel from its tank and oxygen from the air  causing a chemical reaction that releases energy and spins your car&#8217;s  tires.  A quick look at the car&#8217;s gas gauge tells you how much fuel it  has left and therefore how much longer its tires will spin.  Your body  also creates a chemical reaction with oxygen from the air, but where&#8217;s  the gauge that tells you how much longer your cellular tires will spin?   How do all of the trillions of cells in your body coordinate a message  to your brain that says &#8220;Hey! Pull over and fill &#8216;er up!&#8221;</span></p>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-size: small;">Atul Chopra, et al. in the lab of <a href="http://www.bcm.edu/cmb/?pmid=2375" style="color: maroon;">Bert O&#8217;Malley</a> at <a href="http://www.bcm.edu/" style="color: maroon;">Baylor College of Medicine</a> started the year off with a <a href="http://www.ncbi.nlm.nih.gov/pubmed/21195347" style="color: maroon;">great paper</a> designating the role of a protein as the &#8220;gas gauge&#8221; of the cell.</p>
<p><span style="font-size: large;"><br /></span></span>  <span style="font-size: large;"><i><b>Food for Thoughts: A Very Brief Cellular Energy Review</b></i></span></div>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-size: small;">Your mouth, stomach, and intestines, break down the two helpings of  Grandma&#8217;s chicken and dumplings you had for dinner into glucose, amino  and fatty acids.  Using oxygen in a long and roundabout way (remember  all those boring reactions you learned in high school/college biology: <a href="http://en.wikipedia.org/wiki/Citric_acid_cycle" style="color: maroon;">the Krebs cycle</a>, the <a href="http://en.wikipedia.org/wiki/Electron_transport_chain" style="color:maroon;">electron transport chain</a>, <a href="http://en.wikipedia.org/wiki/Glycolysis" style="color: maroon;">glycolysis</a>, etc.?), your cellular engine uses the glucose, amino and fatty acids to create a versatile cellular fuel called <a href="http://en.wikipedia.org/wiki/Adenosine_triphosphate" style="color: maroon;">ATP (Adenosine <i>Tri</i>-Phosphate).</a></span></div>
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<td style="text-align: center;"><a href="http://1.bp.blogspot.com/_EHcejOtaFXg/TUNfr2iUnBI/AAAAAAAAAAM/OKKBKw1i3HM/s1600/Slide1.JPG" imageanchor="1" style="margin-left: auto; margin-right: auto;"><img border="0" height="300" src="http://1.bp.blogspot.com/_EHcejOtaFXg/TUNfr2iUnBI/AAAAAAAAAAM/OKKBKw1i3HM/s400/Slide1.JPG" width="400" /></a></td>
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<td class="tr-caption"><span style="font-size: x-small;"> <b><i>Some of the basic ATP reactions</i></b>.  <i>Reaction 1:</i> The major source of cellular energy (star with E in it) is from this reaction.  <i>Reactions 2 and 3</i> The creation of ATP requires energy and creates AMP.</span></td>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;">Whenever you breathe, walk, run from a lion, type on the keyboard, move  your eyes to read this blog, etc. ATP is broken down into ADP (Adenosine  <i>Di</i>-Phosphate)and AMP (Adenosine<i>Mono</i>-Phosphate).  The  energy released by these reactions is what allows other cellular  reactions to occur.  Pretty much everything you need to live is  regulated by the making and breaking of these bonds.</div>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-size: large;"><i><b>A Chain Reaction of Chain Reactions</b></i></span>  </div>
<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;">The star of Chopra&#8217;s paper is a protein called <a href="http://en.wikipedia.org/wiki/Nuclear_receptor_coactivator_2" style="color:maroon;">NCoA-2 (Nuclear receptor CoActivator 2)</a>. Like a boy scout helping an old lady across a busy street, NCoA-2 is a helper protein that assists other proteins called <a href="http://en.wikipedia.org/wiki/Nuclear_receptor" style="color: maroon;">Nuclear Receptors (NR)</a> express their target genes.</div>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;">Chopra et al. first observed that mice missing NCoA-2(called a <a href="http://en.wikipedia.org/wiki/Knockout_mouse" style="color: maroon;">knock out</a>  or KO mouse) in their livers were not absorbing fat from their food, it  was simply passing right through them.  They also noticed the KO mice  were acquiring high concentrations of bile acids (BAs) in their liver.  <a href="http://blogs.chron.com/proteinwrangler/lipids/" style="color: maroon;">The breakdown and absorption of fat into the body</a> is always accompanied by bile acids (BA).&nbsp;</div>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;">To see if the cause of fat malabsorption was due specifically to the  BAs not reaching the intestines, the researchers simply included BAs in  the food of the KO mice.  Like magic the mice began absorbing fat again.   Next, using a genetic screen Chopra began comparing the expression of  genes of normal liver cells to that of cells missing NCoA-2.  They  observed that the expression of the <a href="http://www.uniprot.org/uniprot/O95342" style="color: maroon;">bile salt export pump (BSEP)</a>  gene was significantly diminished in the cells lacking NCoA-2.  BSEP is  the primary protein responsible for transporting bile acids from the  liver into the gall bladder and it is <a href="http://ajpcell.physiology.org/content/293/5/C1709.full" style="color: maroon;">well known</a> that either absence or mutation of the BSEP causes <a href="http://en.wikipedia.org/wiki/Cholestasis" style="color: maroon;">cholestasis</a>.  <a href="http://www.ncbi.nlm.nih.gov/pubmed?term=ananthanarayanan%20suchy%20makishima" style="color:maroon;">  Previous researchers</a> have shown that the gene responsible for the synthesis of BSEP is under the direction of a NR called <a href="http://en.wikipedia.org/wiki/Farnesoid_X_receptor" style="color: maroon;">FXR (Farnesoid X Receptor)</a>.</div>
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<td style="text-align: center;"><a href="http://2.bp.blogspot.com/_EHcejOtaFXg/TUNftnMpheI/AAAAAAAAAAc/E_z0-rnouhE/s1600/Slide5.JPG" imageanchor="1" style="margin-left: auto; margin-right: auto;"><img border="0" height="300" src="http://2.bp.blogspot.com/_EHcejOtaFXg/TUNftnMpheI/AAAAAAAAAAc/E_z0-rnouhE/s400/Slide5.JPG" width="400" /></a></td>
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<td class="tr-caption" style="text-align: center;"><span style="font-family: &quot;Courier New&quot;,Courier,monospace; font-size: x-small;"><i><b>Production of Bile and Bile acids (blue triangles)</b></i><b></b>.   As the liver makes bile it is pumped into the gall bladder by the bile  salt export pump (BSEP).  The BAs and bile passively flow into the  intestine and form micelles with fat molecules.</span></td>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-size: small;">Realizing the role of NCoA-2 in helping NRs express their target  genes, the O&#8217;Malley scientists began evaluating a theory: Since fat is a  major source of energy is our diets, could there be a protein in the  liver that is regulating cell energy through its activation of NCoA-2?   Could activated NCoA-2 be recruiting FXR and therefore be responsible  for the chain reaction that helps absorb fat?&nbsp;</span></div>
<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-size: small;">&nbsp;</span>  </div>
<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-size: small;">As a result of activity, your cellular AMP/ATP ratio fluctuates and  upon reaching to a certain threshold, the &#8220;Foreman of Cellular Energy&#8221;  is called into action.  That foreman is an enzyme called <a href="http://en.wikipedia.org/wiki/AMP-activated_protein_kinase" style="color: maroon;">AMPK,(AMP-activated Protein Kinase)</a>  and as you may have guessed, in a high AMP/ATP environment it becomes  activated upon binding AMP.  Acting like the &#8220;low fuel light&#8221; on your  car, once activated AMPK begins telling the cell &#8220;We need more ATP!!  Start up the ATP making machinery!&#8221;     </span></div>
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<td style="text-align: center;"><a href="http://1.bp.blogspot.com/_EHcejOtaFXg/TUNfsbrA9JI/AAAAAAAAAAQ/tT5EUmhwQhE/s1600/Slide2.JPG" imageanchor="1" style="margin-left: auto; margin-right: auto;"><img border="0" height="300" src="http://1.bp.blogspot.com/_EHcejOtaFXg/TUNfsbrA9JI/AAAAAAAAAAQ/tT5EUmhwQhE/s400/Slide2.JPG" width="400" /></a></td>
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<td class="tr-caption" style="text-align: center;"><span style="font-size: x-small;"><b style="font-family: &quot;Courier New&quot;,Courier,monospace;"><i>AMPK activation.</i></b><span style="font-family: &quot;Courier New&quot;,Courier,monospace;">  Upon binding two AMP molecules, AMPK becomes activated (circle with P in it).</span></span> </td>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace;"><span style="font-size: small;">To examine if AMPK was involved in stimulating NCoA-2 activity, Chopra  and friends began throwing a battery of molecules that cause energy  starvation at some liver cells and found that the <a href="http://en.wikipedia.org/wiki/AICA_ribonucleotide" style="color: maroon;">one molecule specifically responsible for activating AMPK</a>  impressively increases the expression of BSEP.  Furthermore, using test  tube methods they probed if activated AMPK could interact and stimulate  NCoA-2: indeed it did.  In the concluding experiments to test their  model, the researchers evaluated AMPK KO liver cells and found an  attenuation of BSEP protein expression as well as BA accumulation.</span></div>
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<td style="text-align: center;"><a href="http://3.bp.blogspot.com/_EHcejOtaFXg/TUNftIEMkXI/AAAAAAAAAAU/Ll-m-UH6RmU/s1600/Slide3.JPG" imageanchor="1" style="margin-left: auto; margin-right: auto;"><img border="0" height="300" src="http://3.bp.blogspot.com/_EHcejOtaFXg/TUNftIEMkXI/AAAAAAAAAAU/Ll-m-UH6RmU/s400/Slide3.JPG" width="400" /></a></td>
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<td class="tr-caption" style="text-align: center;"><span style="font-size: x-small;"><b><i>Activation of NCoA-2.</i></b>  Activated AMPK interacts with NCoA-2 and stimulates it (circle with P in  it).  This then allows NCoA-2 to interact more strongly with the  nuclear receptor FXR and therefore begin BSEP expression.</span></td>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;"><span style="font-family: &quot;Courier New&quot;,Courier,monospace; font-size: small;">Using these data, the O&#8217;Malley lab developed what I call the &#8220;gas gauge&#8221;  model(because &#8220;the pump primer&#8221; model just sounded wrong!): a low  energy cellular environment activates AMPK, AMPK stimulates NCoA-2  causing it to increase it&#8217;s co-activation of FXR, which consequently  causes BSEP expression.  Bile acids reach the intestines and the body is  now prepared to ingest fat and increase its energy pool.</span></div>
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<td style="text-align: center;"><span style="font-size: x-small;"><a href="http://1.bp.blogspot.com/_EHcejOtaFXg/TUNfuRdYS9I/AAAAAAAAAAg/Ldu6rXidTSE/s1600/0.gif" imageanchor="1" style="margin-left: auto; margin-right: auto;"><img border="0" height="400" src="http://1.bp.blogspot.com/_EHcejOtaFXg/TUNfuRdYS9I/AAAAAAAAAAg/Ldu6rXidTSE/s400/0.gif" width="176" /></a></span></td>
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<td class="tr-caption" style="text-align: center;"><span style="font-size: x-small;"><i><b>Current schematic of the &#8220;Gas Guage&#8221; model</b></i><b></b>.  Picture courtesy of the <a href="http://www.ncbi.nlm.nih.gov/pubmed/21195347" style="color: maroon;">journal paper</a>.</span></td>
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<div style="font-family: &quot;Courier New&quot;,Courier,monospace;"><span style="font-size: large;"><i><b>Um, who cares?</b></i></span>  </div>
<div style="font-family: &quot;Courier New&quot;,Courier,monospace; text-align: justify;">Along with fat ingestion, <a href="http://www.ncbi.nlm.nih.gov/pubmed/19039140" style="color: maroon;">NCoA-2 has also been found</a>  to be a critical player in glucose maintenance, and this places it as a  major co-activator for total metabolic control.  At first, finding a  direct link from a cellular to a whole body request for energy may seem  merely academic, but there is certainly a bigger picture:  With obesity  in the US being near <a href="http://jama.ama-assn.org/content/303/3/235.full?ijkey=ijKHq6YbJn3Oo&amp;keytype=ref&amp;siteid=amajnls" style="color: maroon;">almost 70%</a>,  we simply do not know enough about how our bodies obtain and use  energy.  While the &#8220;Eat less, Exercise more&#8221; mantra works for some, it  simply doesn&#8217;t work on the morbidly obese, injured, elderly or those  with metabolic disorders and therefore alternative treatments must be  found.</div>
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